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12 Best Invoicing for Nonprofits (2026)

Out of 209 invoicing tools we track, 12 meet the nonprofits bar: free or freemium pricing and editorial score 55+. Ranked by editorial score plus external signals (G2/Capterra reviews, media mentions, featured status).

Key Takeaways
  • Wave is our #1 pick for invoicing for nonprofits in 2026.
  • We analyzed 12 invoicing tools for nonprofits to create this ranking.
  • 12 tools offer free plans, ideal for nonprofits getting started.

At a glance: 12 Invoicing for Nonprofits

Top 10 picks compared. Scroll horizontally on mobile.

#ToolPricingScore
1
Wave logo
Wave
Freemium4.3(2,059 · Sep 2026)View
2
TravelPerk logo
TravelPerk
Freemium4.6(2,550 · Sep 2026)View
3
Sage Intacct logo
Sage Intacct
Freemium4.3(4,086 · Mar 2026)View
4
My Hours logo
My Hours
Freemium4.7(1,253 · Sep 2026)View
5
HoneyBook logo
HoneyBook
Freemium4.6(938 · Sep 2026)View
6
Novo logo
Novo
Freemium4.0(4,812 · Sep 2026)View
7
Paymo logo
Paymo
Freemium4.7(1,280 · Sep 2026)View
8
Melio logo
Melio
Freemium4.1(2,254 · Sep 2026)View
9
Avaza Time logo
Avaza Time
Freemium4.6(859 · Sep 2026)View
10
Zoho Books logo
Zoho Books
Freemium4.4(1,009 · Sep 2026)View

Detailed picks: Invoicing for Nonprofits

1
Wave logo

Wave

Free accounting, invoicing, and receipt scanning for small businesses

Freemium4.3/5(2,059 · Sep 2026)

Key features

  • Free accounting
  • Invoicing
  • Receipt scanning

Pros

  • Core features free
  • Easy to use

Cons

  • Limited features
  • No inventory management
View Details
2
TravelPerk logo

TravelPerk

The intelligent platform for unified business travel, events, and spend management.

Freemium4.6/5(2,550 · Sep 2026)

Key features

  • Seamless trip booking and management across flights, stays, trains, and cars
  • Extensive global inventory with proprietary rates
  • Instant trip changes, rebookings, and cancellations

Pros

  • Centralized platform reduces administrative overhead for travel and spend.
  • AI automation minimizes manual data entry and improves accuracy for expenses and invoices.

Cons

  • Platform fees apply to Premium and Pro plans, charged per booking.
  • VAT-ready invoices are currently limited to specific European countries.
View Details
3
Sage Intacct logo

Sage Intacct

Cloud financial management for growing businesses and mid-market companies.

Freemium4.3/5(4,086 · Mar 2026)

Key features

  • General Ledger
  • Accounts Payable
  • Accounts Receivable

Pros

  • Robust multi-dimensional general ledger provides powerful reporting.
  • Strong capabilities for multi-entity and multi-currency management.

Cons

  • Can be complex to implement and configure initially.
  • Pricing can be higher than some entry-level accounting solutions.
View Details
My Hours logo

My Hours

Free time tracking for projects and tasks, helping teams manage time, increase profitability, and streamline billing.

Freemium4.7/5(1,253 · Sep 2026)

Key features

  • Project and Task Management
  • Stopwatch Timer and Manual Time Entry
  • Timesheet Approval Workflows

Pros

  • Free for up to 5 users, making it accessible for small teams.
  • Comprehensive features for time tracking, project management, billing, and payroll.

Cons

  • Advanced features like granular permissions and mandatory SSO are only available in higher-tier plans.
  • Some users might find the initial setup of projects and tasks detailed.
View Details
HoneyBook logo

HoneyBook

Streamline your clientflow from inquiry to invoice with an all-in-one platform.

Freemium4.6/5(938 · Sep 2026)

Key features

  • Proposals, Contracts & Invoices
  • Online Payments & Recurring Billing
  • Client Portal

Pros

  • Consolidates multiple tools into one platform
  • Professional and branded client experience

Cons

  • Can have a learning curve for new users
  • Pricing may be a significant investment for very small businesses
View Details
Novo logo

Novo

Smarter online business banking solutions for small businesses and self-employed entrepreneurs.

Freemium4.0/5(4,812 · Sep 2026)

Key features

  • Business banking
  • Free checking
  • Invoicing

Pros

  • Business banking for small businesses
  • No hidden fees approach

Cons

  • Limited to US businesses
  • No physical branch locations
View Details
Paymo logo

Paymo

Affordable time tracking, project management, and invoicing software for client projects.

Freemium4.7/5(1,280 · Sep 2026)

Key features

  • Project management
  • Time tracking
  • Resource scheduling

Pros

  • Project management with billing
  • Time tracking

Cons

  • Limited features
  • UI could improve
View Details
Melio logo

Melio

Easy bill payment and invoicing solution for businesses, streamlining AP/AR and cash flow.

Freemium4.1/5(2,254 · Sep 2026)

Key features

  • Business payments
  • Bill pay
  • Vendor management

Pros

  • Free bill pay
  • Pay by card, send as check

Cons

  • Card payments have fees
  • Limited features
View Details
Avaza Time logo

Avaza Time

Unified platform for project management, resource scheduling, time tracking, expenses, and invoicing.

Freemium4.6/5(859 · Sep 2026)

Key features

  • Project & Task Management (Kanban, Gantt, List views)
  • Visual Project Resource Scheduling (drag & drop, availability view)
  • Time Tracking & Expense Management

Pros

  • Unified platform reduces need for multiple apps.
  • User-friendly interface and easy setup.

Cons

  • Additional users for certain roles incur extra monthly costs.
  • Storage limits on lower-tier plans.
View Details
Zoho Books logo

Zoho Books

Integrated accounting for small businesses in the Zoho ecosystem

Freemium4.4/5(1,009 · Sep 2026)

Key features

  • Accounting
  • Invoicing
  • Inventory

Pros

  • Affordable accounting
  • Good for small business

Cons

  • Limited in some countries
  • Less powerful than QuickBooks
View Details
Apptivo logo

Apptivo

Cloud business management suite

Freemium4.4/5(933 · Sep 2026)

Key features

  • Sales CRM with pipeline management, lead scoring, and territory mapping
  • Invoicing and billing with recurring payments and online payment acceptance
  • Project management with Gantt charts, tasks, and time tracking

Pros

  • Extremely customizable without requiring any coding knowledge
  • Modular design lets you start small and add apps as the business grows

Cons

  • Interface feels dated compared to modern CRM competitors
  • Learning curve increases significantly as more apps are activated
View Details
Billsby logo

Billsby

Streamline subscription billing and revenue operations with powerful, customizable software.

Freemium4.8/5(486 · Sep 2026)

Key features

  • Products, plans, and cycles management with advanced pricing modals
  • Multiple payment gateways with no-cost migration
  • Integrated checkout with two lines of code implementation

Pros

  • Easy to use with quick setup (can get started in less than 2 hours)
  • Highly customizable and powerful for various business needs

Cons

  • Automated tax calculations are an additional charge per transaction on paid plans
  • Live chat support is limited to specific EST hours
View Details

How we ranked these Invoicing tools for Nonprofits

Step 1

Filter the catalog

We start from our full database of 209 invoicing tools and keep only those matching nonprofits criteria: free or freemium pricing and editorial score 55+.

Step 2

Score each tool

Editorial score (out of 100) on utility, UX, value, support, and innovation, then layered with external signals: G2/Capterra review volume and average rating, recent media mentions, and featured status.

Step 3

Keep the top 12

We rank by combined score and surface the top 12 so the list stays scannable. Pricing is re-checked on rotation and the page rebuilds hourly via ISR so picks stay fresh.

Buyer's guide

Invoicing for Nonprofits: what to know

Nonprofits (the more common US spelling) share all the dynamics of "non-profits" but the dominant platforms repeat across the segment: Salesforce NPSP, Bloomerang, Neon CRM, DonorPerfect, Little Green Light, Virtuous, Kindful as the donor CRMs; Classy, Givebutter, Donorbox, GivingFuel, GiveLively for online fundraising; Aplos, MIP Fund Accounting, Sage Intacct Nonprofit, QuickBooks Online + nonprofit extensions for accounting.

The unique nonprofit needs not present in for-profit B2B: 990 tax preparation integration (most accounting tools lack this; specialty tools like File990 + Aplos cover it), grant tracking + reporting (Foundant, Instrumentl, Submittable), volunteer management with hours tracking (Better Impact, Galaxy Digital, VolunteerMatch), and donor lifetime value optimization (focused on retention + recurring giving).

The financial reality: nonprofits below $1M annual revenue typically run on QuickBooks Online + Bloomerang or Little Green Light + Google Workspace nonprofit edition + Mailchimp nonprofit (15% discount).

Challenges Nonprofits face

  • Form 990 tax preparation + transparency requirements differ from for-profit accounting
  • Recurring giving (monthly donors) drives 60%+ of major-donor program but takes years to build
  • Grant reporting requirements vary by funder; tracking outcomes + impact is manual
  • Volunteer hours tracking + Department of Labor compliance for organizations using interns
  • Donor data hygiene across CRM + fundraising platform + email is constant work

What to prioritize when picking a tool

  • Donor CRM (Bloomerang, NPSP, Neon, DonorPerfect, Little Green Light)
  • Online fundraising (Classy, Givebutter, Donorbox, GiveLively)
  • Fund accounting (Aplos, MIP, Sage Intacct Nonprofit)
  • Grant management (Foundant, Instrumentl, Submittable)
  • Volunteer + program management

Frequently asked questions

What is the best invoicing tool for nonprofits in 2026?

Wave ranks first in our invoicing list for nonprofits, rated 4.3/5 across 2,059 verified user reviews. Strong runners-up are TravelPerk, Sage Intacct, My Hours.

Are there free invoicing tools for nonprofits?

Yes. Wave, TravelPerk, Sage Intacct offer a free or freemium plan that fits nonprofits.

How did we pick these invoicing tools?

We filtered our database of 209 invoicing tools to keep only those that match nonprofits: free or freemium pricing and editorial score 55+. The remaining 12 are ranked by editorial score and external signals (G2/Capterra review volume, media mentions, featured status).

What features should nonprofits look for in invoicing software?

Based on our analysis of the top picks, prioritize: free accounting, invoicing, receipt scanning, payroll. These are common to the highest-rated tools in this list.

How often is this list updated?

We refresh editorial scores and pricing weekly. Tool pricing is re-checked on a rotation that touches every tool roughly monthly. The list above was generated on September 18, 2026.

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